chore: flatten src/ to root

commands/permissions/index.ts

@@ -0,0 +1,11 @@
+import type { Command } from '../../commands.js'
+
+const permissions = {
+  type: 'local-jsx',
+  name: 'permissions',
+  aliases: ['allowed-tools'],
+  description: 'Manage allow & deny tool permission rules',
+  load: () => import('./permissions.js'),
+} satisfies Command
+
+export default permissions